How Gut Microbes Affect Our Health, Brain and Eating Habits
Inside our gut lives a complex community of microorganisms called the gut microbiota. These include bacteria, viruses, archaea, and protozoa — all of which play critical roles in digestion, immune defense, brain function, and overall health. There are more of these microbes than human cells in our bodies, and their combined genes greatly outnumber our own.
One of the most fascinating discoveries in modern science is how the gut communicates with the brain. This two-way connection is called the microbiota-gut-brain axis. It explains why changes in the gut microbiota are linked not just to physical diseases like obesity or malnutrition, but also to mental health conditions such as depression, anxiety, and eating disorders.
Gut Microbes and Eating Behavior
Gut microbes affect how the body processes energy and regulates hunger and fullness. The brain’s hypothalamus uses hormones like leptin, insulin, PYY, and GLP-1 to signal satiety (fullness), while ghrelin signals hunger. These hormones influence not just the appetite centers in the brain but also the reward system, which plays a role in emotional eating, cravings, and impulsive behavior. That’s why eating behavior is driven by more than just willpower — it’s a mix of biology, hormones, emotions, and gut health.
Gut bacteria also produce short-chain fatty acids (SCFAs) when digesting fiber, which help regulate fat storage, appetite, and metabolism. A healthy gut barrier keeps harmful substances from entering the bloodstream, but when this barrier weakens, it can lead to inflammation and disease.
Infant Microbiome and Long-Term Health
The gut microbiota starts forming at birth, and by the age of 2–3, it should mature into a more adult-like state. This early stage of microbiome development is critical for long-term health because it helps educate the immune system and prime organ function.
However, several common birth and feeding practices can disturb this natural development. For example:
- C-sections prevent exposure to beneficial microbes from the mother’s birth canal.
- Perinatal antibiotics can wipe out helpful bacteria in both the mother and baby.
- Formula feeding lacks the natural prebiotics and probiotics found in breast milk.
These disruptions can lead to an immature or unbalanced microbiome, which has been linked to increased risks of metabolic and immune-related diseases later in life. Conditions like asthma, obesity, allergies, and even type 1 diabetes may be connected to early-life microbiome changes.
Severe Malnutrition: Kwashiorkor
One striking example is kwashiorkor, a severe form of malnutrition in young children. It is not only caused by poor nutrition but also linked to gut microbiota immaturity. In fact, researchers have shown that transferring gut microbes from children with kwashiorkor into mice causes similar symptoms, including extreme weight loss. Even more, this effect can be passed from mother to offspring. Treatments like antibiotics — specifically amoxicillin and cefdinir — have helped reduce death rates in children with this condition, showing how central the microbiome is to recovery.
Restoring the Infant Microbiome
Because early microbiome development has such lasting effects, there’s growing interest in how to restore a healthy microbiome in infants. Breastfeeding, vaginal seeding (in some cases after C-sections), and the use of probiotics are among the strategies being studied. These efforts aim to lower the risk of chronic disease and support healthier immune and metabolic development. However, more research is still needed to understand the safest and most effective ways to support the microbiome during this crucial stage of life.
In Summary:
The gut microbiota is deeply involved in nearly every aspect of human health — from digestion and immune function to brain behavior and disease risk. This is especially true in early life, when the infant microbiome helps shape lifelong health outcomes. Supporting gut health from birth through adulthood could lead to better treatments and prevention strategies for both physical and mental health conditions.
* Oils can shift the microbiota immediately whether positively or adversely. Oils can also affect the immune system immediately.
I forgot to mention that in the about section you can request the WHO Millennium document for free if you desire. Just follow the link and go to patient access. I just can’t publish it but they will send it to an interested party for free. You can also access Mom Matters for free as well.

Immune For Life
Forgotten factors for life and health that are shaping the future of drugs and food.
Journey to a healthier lifestyle

Immune For Life
M. Ferrari
After decades of chronic health conditions and serious gut issues like IBS and SIBO, immune deficiencies and an autoimmune condition discover how I recovered my health thanks to natural oral immune therapeutics (maf and gcmaf). Due to a premature birth and being formula fed, I was a SAM child in real life. My book is a step by step journey you won't want to miss that illustrates how to regain or maintain health for all ages.